Databases
Protein Data Bank 
AlphaFold Database
BindingDB 
ZINC Database
PubChem Database

Software’s
AutoDock Vina
VMD
ChimeraX
Avogadro
GROMACS
gmx_MMPBSA
AmberTools
Open Babel
KNIME
Chemaxon

Tutorials
GROMACS Tutorial
Docking Tutorial